Volume 48, Issue 2 (March 2003)

    Variant Alleles on the Penta E Locus in the PowerPlex® 16 Kit

    (Received 27 July 2002; accepted 16 November 2002)

    Published Online: March


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    Penta E in the PowerPlex® 16 kit is a pentanucleotide tandem repeat marker located on Chromosome 15, containing an AAAGA repeat motif. Variant alleles (18.4 and 19.4) were found in the Japanese population. A sequence analysis revealed that both the variant alleles had a partial repeat motif of AAAA, resulting in one-base-shorter alleles compared to known alleles. Despite the relatively large amplicon sizes (379 to 474 bp) of Penta E, an accurate allele assignment can be reliably made by capillary electrophoresis. However, alleles differing in size by only one base (e.g., 18.4 and 19) were not separated and appeared as a single broad peak. The Genotyper® software assigned one of the component alleles to this peak. Therefore, such broad peaks require careful interpretation so as to not overlook the other component allele contained by the peak. As an index to recognize a peak containing two alleles, the ratio of peak area to peak height was found to be useful.

    Stock #: JFS2002259

    ISSN: 0022-1198

    DOI: 10.1520/JFS2002259

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    Title Variant Alleles on the Penta E Locus in the PowerPlex® 16 Kit
    Symposium , 0000-00-00
    Committee E30